PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Jcr4S00420.40
Common NameERF1, JCGZ_24640
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
Family ERF
Protein Properties Length: 354aa    MW: 39150.5 Da    PI: 4.736
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Jcr4S00420.40genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP261.12.6e-19119168255
            AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                    +y+G+r+++ +g+W+AeIrdp++     r++lg+f taeeAa+a++a +++++g
  Jcr4S00420.40 119 QYRGIRQRP-WGKWAAEIRDPRK---GVRVWLGTFNTAEEAARAYDAEARRIRG 168
                    69*******.**********954...4************************998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.94E-32119177No hitNo description
SMARTSM003806.4E-38119182IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.6E-32119178IPR001471AP2/ERF domain
PROSITE profilePS5103224.092119176IPR001471AP2/ERF domain
SuperFamilySSF541714.18E-22119177IPR016177DNA-binding domain
PRINTSPR003671.0E-11120131IPR001471AP2/ERF domain
PfamPF008477.7E-12120168IPR001471AP2/ERF domain
PRINTSPR003671.0E-11142158IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0070483Biological Processdetection of hypoxia
GO:0005634Cellular Componentnucleus
GO:0005886Cellular Componentplasma membrane
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 354 aa     Download sequence    Send to blast
MCGGAIISDF IPPAVAGRSS RRLTADFLWP DLKKPIGKQY SKPVVDLDND FEADFQEFKD  60
ESDADEEDDV MLDVKPFAFS ATASPPARNR SSSRGSAAVK SVEFNGQAEK SAKRKRKNQY  120
RGIRQRPWGK WAAEIRDPRK GVRVWLGTFN TAEEAARAYD AEARRIRGKK AKVNFPEEAP  180
HASPKRPSKA NSQKSLGKTN LAENLNYLDN PEQDYFNSMG FVEEKPPVSQ FGIMDSLPVN  240
GDAVSRLAKT PEISSVLSAT PEIDESLFIE DANPKKKLKS DSGNEAPAEE NNGKSLSDEL  300
LAFENQMNYQ MPYLEGSWEA SLDSFLNGDT TQDGGNPMDL WSFDDLAGMV GGVY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-20119176563ATERF1
3gcc_A2e-20119176563ATERF1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1273279PKKKLKS
Function -- GeneRIF ? help Back to Top
  1. Jatropha curcas ERF1 is a new member of the ERF transcription factors family that may play an important role in tolerance to environmental stress.
    [PMID: 25540008]
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00204DAPTransfer from AT1G53910Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHM7763140.0HM776314.1 Jatropha curcas ethylene-responsive transcription factor (ERF1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001295665.10.0ethylene-responsive transcription factor RAP2-12-like
RefseqXP_012068806.10.0PREDICTED: ethylene-responsive transcription factor RAP2-12-like
SwissprotQ9SSA83e-78RA212_ARATH; Ethylene-responsive transcription factor RAP2-12
TrEMBLI6MBV00.0I6MBV0_JATCU; Ethylene-responsive transcription factor
STRINGPOPTR_0003s06930.11e-169(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF48083252
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G53910.32e-70related to AP2 12
Publications ? help Back to Top
  1. Zhang L, et al.
    Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress.
    PLoS ONE, 2014. 9(5): p. e97878
    [PMID:24837971]
  2. Yang H, et al.
    Overexpression of the Jatropha curcas JcERF1 gene coding an AP2/ERF-type transcription factor increases tolerance to salt in transgenic tobacco.
    Biochemistry Mosc., 2014. 79(11): p. 1226-36
    [PMID:25540008]